UGENE is a free cross-platform genome analysis suite.

It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.

Features:

• Multiple sequence alignment using MUSCLE 3,4 and KAlign;
• HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
• PCR Primers design using Primer 3;
• Protein secondary structure prediction using GOR IV and PSIPRED;
• Phylogenetic analysis with Phylip;
• Search for restriction enzymes and integration with REBASE;
• Extremely fast repeat finder;
• DNA reference assembly using Bowtie;
• Search for transcription factor binding sites using SITECON;
• Protein back translation;
• ORF finder;
• Complete Smith-Waterman algorithm implementation;
• Comparing genomes using dotplot view.

• Visual and interactive genome browsing including circular plasmid view;
• Multiple alignment editor;
• Chromatograms visualization;
• 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support;
• Phylogenetic tree viewer;
• Easy to use workflow designer for custom computational workflows.

• Complete support of modern multicore processors and SSE instructions;
• Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
• Integrated solutions for Cell Broadband Engine;
• Support for supercomputers and distributed computing.

• Can be used for education purposes in schools and universities;
• Features to be included into the next release are initiated by users;
• UGENE team is ready for collaboration in related projects, both free or commercial.

Unipro UGENE is a free software distributed under the terms of GNU General Public License.

Prebuilt version for set of operating systems can be found here.

Contact us to learn more about alternative licensing terms.